Transcriptome analysis

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Transcriptome analysis by Mind Map: Transcriptome analysis

1. Differential expression

1.1. Clustering

1.1.1. Coexpression

1.1.2. Coregulation

1.1.3. Heat map

1.2. R tools

2. Mapping tools

2.1. Bowtie

2.2. Stringtie

2.3. Hisat2

3. RNA

3.1. Expression

4. Pipeline

5. Reference genome

5.1. reference transcriptome

6. De Novo assembly (of RNA reads)

7. goals

7.1. Novel enzymes

7.2. New/cheaper drugs

8. Data

8.1. Parsing

8.2. RNA

8.3. Data structures

8.4. Big data

8.4.1. Fast code