Transcriptome analysis

1. Pipeline

2. Reference genome

2.1. reference transcriptome

3. De Novo assembly (of RNA reads)

4. Data

4.1. Parsing

4.2. RNA

4.3. Data structures

4.4. Big data

4.4.1. Fast code

5. Differential expression

5.1. Clustering

5.1.1. Coexpression

5.1.2. Coregulation

5.1.3. Heat map

5.2. R tools

6. Mapping tools

6.1. Bowtie

6.2. Stringtie

6.3. Hisat2

7. RNA

7.1. Expression

8. goals

8.1. Novel enzymes

8.2. New/cheaper drugs