Leukippos's SynBio App Central

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Leukippos's SynBio App Central by Mind Map: Leukippos's SynBio App Central

1. Find info

1.1. Information repositories

1.1.1. Data sharing/collaboration

1.1.1.1. Data sharing

1.1.1.2. Collaboration/information sharing

1.1.2. Databases

1.1.2.1. BLAST search

1.1.2.2. Registry

1.1.2.3. Information resource

1.1.2.4. Repository

1.1.3. Reference

1.1.3.1. Part documentation

1.1.3.2. Literature

1.2. Education

1.2.1. Game

1.3. Laboratory Protocols

1.3.1. Protocol Generation

1.3.2. Physical assembly

1.3.3. Lab manual

1.3.4. Gibson assembly

1.4. Hardware

1.4.1. Hardware drivers

1.4.2. Construction instructions

1.4.3. Laboratory automation

1.4.4. Robotics

1.4.5. Operation

2. Use info

2.1. Sequence analysis

2.1.1. Sequence analysis

2.1.2. RNA Simulation

2.1.3. Sequence optimization

2.1.4. Codon optimization

2.1.5. Sequence alignment

2.1.6. Restriction enzyme cut site search

2.2. Modelling

2.2.1. Mathematical modelling

2.2.1.1. Matlab

2.2.2. Cell simulations

2.2.2.1. Bacteria Simulation

2.2.2.2. Simulations of Cell behavior

2.2.3. Molecular structure

2.3. Visualization

2.4. Lab tools

2.4.1. E-lab notebooks

2.4.2. Image analysis

2.4.3. Calculator

2.5. Protein analysis

2.5.1. Protein interaction prediction

2.5.2. Protein structure

2.6. Validating drug discovery

2.7. Biosecurity

3. Create info

3.1. DNA design

3.1.1. Genome design

3.1.2. Parts design

3.1.3. Sequence generation

3.2. RNA design

3.2.1. Primer design

3.2.2. Ribosome Binding Site

3.2.3. Sequence generation

3.2.4. Parts design

3.3. Circuit design

3.3.1. Circuit design and simulation

3.3.1.1. Biological network design

3.3.1.2. Network design

3.3.2. Circuit optimization

3.4. Integrated workflow

3.4.1. Workflow management

3.4.2. Integrated design

3.4.3. Integrated framework

3.5. Metabolic engineering

3.5.1. Pathway generation

3.6. Language definition/Standards