Find My Samples
af Jillian Daisy Rowe
1. Samples are Directories
1.1. - sample_rule: ''(Sample.*)" - find_sample_bydir: 1
2. Samples are Files
2.1. - sample_rule: "(Sample.*)" - find_sample_bydir: 0
3. I want to supply my own pattern
3.1. - sample_glob: 'data/raw/batch*/Sample*
4. I want to supply the samples
4.1. On the command line
4.1.1. biox run -w workflow.yml --samples Sample1,Sample2
4.2. In the workflow
4.2.1. --- global: - samples: - Sample_01 - Sample_02