Find My Samples

1. Samples are Directories

1.1. - sample_rule: ''(Sample.*)" - find_sample_bydir: 1

2. Samples are Files

2.1. - sample_rule: "(Sample.*)" - find_sample_bydir: 0

3. I want to supply my own pattern

3.1. - sample_glob: 'data/raw/batch*/Sample*

4. I want to supply the samples

4.1. On the command line

4.1.1. biox run -w workflow.yml --samples Sample1,Sample2

4.2. In the workflow

4.2.1. --- global: - samples: - Sample_01 - Sample_02