BLASTER Arguments
Main Pipeline with arguments MindMap for SIDER_RepetitiveSearcher project
BLASTER Arguments
作者：Francisco Pacheco Hinojosa
1. **repetitive_blaster**
1.1. genome_fasta
1.2. path_input
1.3. folder_path
1.4. naming_short
1.5. numbering
1.6. max_diff
1.7. maximun_runs
2. **boxymcboxface**
2.1. message
3. **genome_specific_chromosome_main**
3.1. path_input
3.2. chromosome_ID
3.3. main_folder_path
3.4. genome_fasta
3.5. naming_short
3.6. nax_diff
4. **specific_sequence_extractor**
4.1. path_input
4.2. chromosome_ID
4.3. main_folder_path
5. **specific_sequence_1000nt**
5.1. path_input
5.2. chromosome_ID
5.3. main_folder_path
6. **fasta_creator**
6.1. path_input
6.2. fasta_output_path
7. **blastn_dic**
7.1. path_input
8. **blastn_blaster**
8.1. query_path
8.2. dict_path
8.3. outfile_path
8.4. perc_identity
8.4.1. **85** -> for the 1000nt expanded 1st Run
8.4.2. **60** -> for the 2nd Run
9. **specific_sequence_corrected**
9.1. path_input
9.2. nucleotides1000_directory
9.3. main_folder_path
9.4. chromosome_ID
10. **filter_by_column**
10.1. path_input
10.2. column
10.2.1. "length" -> **1st Run** 1000nt BLAST against each other
10.2.2. "length" -> **2nd Run**
10.3. size_filter
10.3.1. 100 -> **1st run** of 1000nt BLAST against each other
10.3.2. 100 -> **2nd Run**