Ubiquitous Galaxy

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Ubiquitous Galaxy par Mind Map: Ubiquitous Galaxy

1. Pulsar

1.1. Offers

1.1.1. Resource access

1.2. TODO

1.2.1. Scriptable deployment & config

1.2.1.1. Run in a Docker container?

1.2.2. Tool installation on demand

2. Docker

2.1. Offers

2.1.1. Tool availability

3. Galaxy

3.1. Offers

3.1.1. Dedicated starting point

3.1.2. Multiple storage locations/devices

3.2. TODO

3.2.1. Hookup to external resources

3.2.1.1. Runtime job_conf reload

3.2.1.2. Users attach new resources

3.2.1.3. Resource discovery & monitoring

3.2.1.4. Ability for users to request use of external resources

3.2.1.4.1. Integrated launcher

3.2.2. Keep up with locality of data

3.2.2.1. Job scheduling w/ data locality awareness

3.2.3. ObjectStore

3.2.3.1. Bucket-per-user

3.2.3.2. Dropbox?

3.2.3.3. Archive data

4. CloudMan

4.1. Offers

4.1.1. Infrastructure provisioning

4.1.2. Galaxy management

4.1.3. Connect to existing data sources (eg, ref data)

4.2. TODO

4.2.1. Pulsar integration

4.2.2. Automated deployment & config

4.2.3. Ansible integration

4.2.3.1. Or deploy Docker containers?

4.2.4. Run in a Docker container?

4.2.5. REST API

4.2.5.1. BioBlend

5. Ansible

5.1. Offers

5.1.1. Resource configuration

5.2. TODO

5.2.1. Driver script?

5.2.2. Cloud-suitable

5.2.3. Docs

5.2.4. Build components as Docker containers