Bioinformatics

1. Structural bioinformatics

1.1. amino acid

1.2. primary structure

1.3. secondary structure

1.4. tertiary structure

1.5. quaternary structure

2. Databases

2.1. biological sequence analysis

2.2. structure analysis

2.3. finding Protein Families and Motif Finding

2.4. Next Generation Sequencing

2.5. Network Analysis: Metabolic Pathway Databases

2.6. design of synthetic genetic circuits

3. Software and tools

3.1. Open-source bioinformatics software

3.2. Web services in bioinformatics

3.3. Bioinformatics workflow management systems

3.4. BioCompute and BioCompute Objects

4. Evolution

4.1. Sources of variation

4.1.1. Mutation

4.1.2. Gene flow

4.1.3. Sex and recombination

4.2. Evolutionary processes

4.2.1. Natural selection

4.2.2. Genetic hitchhiking

4.2.3. Sexual selection

4.2.4. Genetic drift

4.2.5. Gene flow

4.2.6. Mutation bias

5. Biochemistry

5.1. Biomolecules

5.2. Carbohydrates

5.3. Lipids

5.4. Proteins

5.5. Nucleic acids

6. Sequences

7. biological processes

7.1. data mining

7.2. pattern recognition

7.3. machine learning

7.4. visualization

8. research

8.1. sequence alignment

8.2. gene finding

8.3. genome assembly

8.4. drug design

8.5. drug discovery

8.6. protein structure alignment

8.7. protein structure prediction

8.8. gene expression

8.9. protein–protein interactions

9. Sequence analysis

9.1. DNA sequencing

9.2. Genome annotation

9.3. Gene function prediction

9.4. Computational evolutionary biology

9.5. Comparative genomics

9.6. Pan genomics

9.7. Genetics of disease

9.8. Analysis of mutations in cancer

10. Gene and protein expression

10.1. Analysis of gene expression

10.2. Analysis of protein expression

10.3. Analysis of regulation

10.4. Analysis of cellular organization

10.5. Microscopy and image analysis

10.6. Protein localization

10.7. Nuclear organization of chromatin