BLASTER - Programming
Main Pipeline MindMap for SIDER_RepetitiveSearcher project
BLASTER - Programming
作者：Francisco Pacheco Hinojosa
1. **genome_solap_location_filter**
1.1. For each DNA strand we get the **start** and **end** coordinates
2. **genome_solap_location_grouping**
2.1. For each DNA strand it will group coordinates depending on nearness
3. **genome_solap_by_pairs**
3.1. It will analyze two sequence which are overlaping and join them
4. **genome_solap_minmax**
4.1. Depending on each DNA strand it will get the *minimum* or *maximum* of each **group**
5. **genome_solap_main**
6. **chromosome_filter**
6.1. It reads a **FASTA** file and numbers all the sequences with a custom made **prefix**
6.2. The sequences in fasta file NEED to be in order
7. **genome_pre_duplicate_filter**
7.1. Filters the data in a **CSV** for duplicated sequences
8. **genome_duplicate_filter**
8.1. Calls *genome_pre_duplicate_filter* for "+" and "-" DNA strand and unites the results.
8.2. The Output is a **CSV** file with the data filtered.
9. **dash_filter**
9.1. Will filter **dashes**, "-", in a **CSV** file
10. **global_filters_main**
10.1. Mixes other filters
10.2. The Output is a **CSV** which is constantly overwritten
11. **csv_creator**
11.1. Creates a **CSV** file
12. **specific_sequence_corrected**
12.1. It reads the **CSV** file and finds the **correct coordinates** of the sequences.
13. **filter_by_column**
13.1. Filter **CSV** data depending on:
13.1.1. Minimun sequence **length**
13.1.2. Minimum identity **percent**